Detailed information of SNP:
|
SNP ID:
sf0140208538(Gbrowse)
Chromosome: chr01 Position: 40208538 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 53.98% | 46.02% |
| All Indica | 789 | 86.57% | 13.43% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 206 | 82.04% | 17.96% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140208538 | G->A | INTERGENIC | None |