Detailed information of SNP:
|
SNP ID:
sf0140247554(Gbrowse)
Chromosome: chr01 Position: 40247554 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 97.37% | 2.63% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 451 | 94.90% | 5.10% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 304 | 96.05% | 3.95% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 56 | 83.93% | 16.07% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140247554 | G->A | INTERGENIC | None |