Detailed information of SNP:
|
SNP ID:
sf0140348638(Gbrowse)
Chromosome: chr01 Position: 40348638 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 60.69% | 39.31% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 89.05% | 10.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140348638 | G->A | LOC_Os01g69850(LOC_Os01g69850.1) | INTRON |