Detailed information of SNP:
|
SNP ID:
sf0140365169(Gbrowse)
Chromosome: chr01 Position: 40365169 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1359 | 85.06% | 14.94% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 438 | 55.02% | 44.98% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 284 | 38.38% | 61.62% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 62 | 75.81% | 24.19% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140365169 | C->T | INTERGENIC | None |