Detailed information of SNP:
|
SNP ID:
sf0140394536(Gbrowse)
Chromosome: chr01 Position: 40394536 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1334 | 72.04% | 27.96% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 415 | 12.77% | 87.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 2.45% | 97.55% |
| Tropical Japonica | 44 | 63.64% | 36.36% |
| Japonica Intermediate | 45 | 37.78% | 62.22% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140394536 | T->C | INTERGENIC | None |