Detailed information of SNP:
|
SNP ID:
sf0140414545(Gbrowse)
Chromosome: chr01 Position: 40414545 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 92.76% | 7.24% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 473 | 79.28% | 20.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 330 | 98.18% | 1.82% |
| Tropical Japonica | 86 | 18.60% | 81.40% |
| Japonica Intermediate | 57 | 61.40% | 38.60% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140414545 | C->T | INTERGENIC | None |