Detailed information of SNP:



SNP ID: sf0140419318(Gbrowse)

Chromosome: chr01

Position: 40419318
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 86.82% 13.18%
All Indica799 99.87% 0.13%
All Japonica497 63.18% 36.82%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 80.00% 20.00%
Tropical Japonica94 18.09% 81.91%
Japonica Intermediate68 42.65% 57.35%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0140419318 G->A INTERGENIC None