Detailed information of SNP:
|
SNP ID:
sf0140467574(Gbrowse)
Chromosome: chr01 Position: 40467574 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.20% | 9.80% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 496 | 74.80% | 25.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140467574 | G->A | INTERGENIC | None |