Detailed information of SNP:
|
SNP ID:
sf0140473176(Gbrowse)
Chromosome: chr01 Position: 40473176 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 81.13% | 18.87% |
| All Indica | 796 | 74.75% | 25.25% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 211 | 22.27% | 77.73% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140473176 | T->C | INTERGENIC | None |