Detailed information of SNP:
|
SNP ID:
sf0140473460(Gbrowse)
Chromosome: chr01 Position: 40473460 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1378 | 96.01% | 3.99% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 456 | 88.60% | 11.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 69 | 34.78% | 65.22% |
| Japonica Intermediate | 54 | 88.89% | 11.11% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140473460 | A->G | INTERGENIC | None |