Detailed information of SNP:
|
SNP ID:
sf0140476070(Gbrowse)
Chromosome: chr01 Position: 40476070 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.48% | 45.52% |
| All Indica | 797 | 25.97% | 74.03% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 1.87% | 98.13% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 209 | 13.88% | 86.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140476070 | A->G | INTERGENIC | None |