Detailed information of SNP:
|
SNP ID:
sf0140490152(Gbrowse)
Chromosome: chr01 Position: 40490152 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 96.14% | 3.86% |
| All Indica | 702 | 93.16% | 6.84% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 320 | 94.06% | 5.94% |
| Indica II | 201 | 93.53% | 6.47% |
| Indica Intermediate | 181 | 91.16% | 8.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140490152 | T->A | INTERGENIC | None |