Detailed information of SNP:



SNP ID: sf0140490883(Gbrowse)

Chromosome: chr01

Position: 40490883
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 52.22% 47.78%
All Indica799 78.47% 21.53%
All Japonica497 1.61% 98.39%
Aus67 100.00% 0.00%
Indica I375 99.20% 0.80%
Indica II213 30.52% 69.48%
Indica Intermediate211 90.05% 9.95%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica94 2.13% 97.87%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0140490883 T->C INTERGENIC None