Detailed information of SNP:
|
SNP ID:
sf0140492228(Gbrowse)
Chromosome: chr01 Position: 40492228 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 51.41% | 48.59% |
| All Indica | 786 | 24.81% | 75.19% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 62 | 16.13% | 83.87% |
| Indica I | 372 | 25.81% | 74.19% |
| Indica II | 210 | 15.24% | 84.76% |
| Indica Intermediate | 204 | 32.84% | 67.16% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 4 | 100.00% | 0.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140492228 | G->A | INTERGENIC | None |