Detailed information of SNP:
|
SNP ID:
sf0140492514(Gbrowse)
Chromosome: chr01 Position: 40492514 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.46% | 49.54% |
| All Indica | 798 | 24.31% | 75.69% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 25.60% | 74.40% |
| Indica II | 213 | 15.49% | 84.51% |
| Indica Intermediate | 210 | 30.95% | 69.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140492514 | T->C | INTERGENIC | None |