Detailed information of SNP:
|
SNP ID:
sf0140500312(Gbrowse)
Chromosome: chr01 Position: 40500312 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 53.66% | 46.34% |
| All Indica | 790 | 25.32% | 74.68% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 26.47% | 73.53% |
| Indica II | 212 | 16.04% | 83.96% |
| Indica Intermediate | 204 | 32.84% | 67.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140500312 | G->T | LOC_Os01g70020(LOC_Os01g70020.1) | Synonymous |