Detailed information of SNP:
|
SNP ID:
sf0140587863(Gbrowse)
Chromosome: chr01 Position: 40587863 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.67% | 12.33% |
| All Indica | 799 | 78.85% | 21.15% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 77.33% | 22.67% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 73.93% | 26.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140587863 | T->A | LOC_Os01g70130(LOC_Os01g70130.1) | INTRON |
| sf0140587863 | T->A | LOC_Os01g70130(LOC_Os01g70130.2) | INTRON |