Detailed information of SNP:
|
SNP ID:
sf0140612857(Gbrowse)
Chromosome: chr01 Position: 40612857 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1285 | 53.85% | 46.15% |
| All Indica | 674 | 68.10% | 31.90% |
| All Japonica | 495 | 32.32% | 67.68% |
| Aus | 64 | 65.62% | 34.38% |
| Indica I | 307 | 69.06% | 30.94% |
| Indica II | 187 | 82.35% | 17.65% |
| Indica Intermediate | 180 | 51.67% | 48.33% |
| Temperate Japonica | 335 | 42.09% | 57.91% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140612857 | T->G | INTERGENIC | None |