Detailed information of SNP:
|
SNP ID:
sf0140614146(Gbrowse)
Chromosome: chr01 Position: 40614146 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1382 | 95.73% | 4.27% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 461 | 88.07% | 11.93% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 305 | 86.56% | 13.44% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 64 | 85.94% | 14.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140614146 | T->C | INTERGENIC | None |