Detailed information of SNP:
|
SNP ID:
sf0140617301(Gbrowse)
Chromosome: chr01 Position: 40617301 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 92.81% | 7.19% |
| All Indica | 798 | 90.60% | 9.40% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140617301 | C->A | LOC_Os01g70180(LOC_Os01g70180.1) | INTRON |