Detailed information of SNP:
|
SNP ID:
sf0140788690(Gbrowse)
Chromosome: chr01 Position: 40788690 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 68.71% | 31.29% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 18.51% | 81.49% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140788690 | A->G | LOC_Os01g70410(LOC_Os01g70410.3) | INTRON |
| sf0140788690 | A->G | LOC_Os01g70410(LOC_Os01g70410.2) | INTRON |
| sf0140788690 | A->G | LOC_Os01g70410(LOC_Os01g70410.1) | INTRON |