Detailed information of SNP:
|
SNP ID:
sf0140811287(Gbrowse)
Chromosome: chr01 Position: 40811287 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 65.09% | 34.91% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 496 | 12.50% | 87.50% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 334 | 17.07% | 82.93% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140811287 | A->G | INTERGENIC | None |