Detailed information of SNP:
|
SNP ID:
sf0140855491(Gbrowse)
Chromosome: chr01 Position: 40855491 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 60.26% | 39.74% |
| All Indica | 788 | 38.83% | 61.17% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 52 | 26.92% | 73.08% |
| Indica I | 369 | 18.70% | 81.30% |
| Indica II | 211 | 58.29% | 41.71% |
| Indica Intermediate | 208 | 54.81% | 45.19% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 35 | 51.43% | 48.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140855491 | C->T | LOC_Os01g70540(LOC_Os01g70540.1) | Non-Synonymous SNP |