Detailed information of SNP:
|
SNP ID:
sf0140884232(Gbrowse)
Chromosome: chr01 Position: 40884232 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 53.49% | 46.51% |
| All Indica | 797 | 91.09% | 8.91% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140884232 | G->A | LOC_Os01g70630(LOC_Os01g70630.1) | INTRON |