Detailed information of SNP:
|
SNP ID:
sf0140887087(Gbrowse)
Chromosome: chr01 Position: 40887087 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 95.49% | 4.51% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140887087 | T->C | LOC_Os01g70630(LOC_Os01g70630.1) | Non-Synonymous SNP |