Detailed information of SNP:
|
SNP ID:
sf0140887361(Gbrowse)
Chromosome: chr01 Position: 40887361 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1361 | 94.12% | 5.88% |
| All Indica | 796 | 98.99% | 1.01% |
| All Japonica | 444 | 92.79% | 7.21% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 298 | 93.62% | 6.38% |
| Tropical Japonica | 81 | 96.30% | 3.70% |
| Japonica Intermediate | 65 | 84.62% | 15.38% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140887361 | G->A | LOC_Os01g70630(LOC_Os01g70630.1) | SNPs that introduce stop codons |