Detailed information of SNP:
|
SNP ID:
sf0140888852(Gbrowse)
Chromosome: chr01 Position: 40888852 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 65.44% | 34.56% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140888852 | G->T | LOC_Os01g70630(LOC_Os01g70630.1) | Non-Synonymous SNP |