Detailed information of SNP:
|
SNP ID:
sf0140996579(Gbrowse)
Chromosome: chr01 Position: 40996579 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1245 | 91.65% | 8.35% |
| All Indica | 629 | 84.42% | 15.58% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 285 | 77.54% | 22.46% |
| Indica II | 192 | 94.27% | 5.73% |
| Indica Intermediate | 152 | 84.87% | 15.13% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0140996579 | A->T | INTERGENIC | None |