Detailed information of SNP:
|
SNP ID:
sf0141046199(Gbrowse)
Chromosome: chr01 Position: 41046199 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 91.82% | 8.18% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141046199 | A->G | INTERGENIC | None |