Detailed information of SNP:
|
SNP ID:
sf0141057973(Gbrowse)
Chromosome: chr01 Position: 41057973 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.95% | 49.05% |
| All Indica | 796 | 15.95% | 84.05% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 13.37% | 86.63% |
| Indica II | 213 | 4.23% | 95.77% |
| Indica Intermediate | 209 | 32.54% | 67.46% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141057973 | G->A | INTERGENIC | None |