Detailed information of SNP:
|
SNP ID:
sf0141057995(Gbrowse)
Chromosome: chr01 Position: 41057995 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141057995 | T->A | INTERGENIC | None |