Detailed information of SNP:
|
SNP ID:
sf0141058438(Gbrowse)
Chromosome: chr01 Position: 41058438 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.88% | 49.12% |
| All Indica | 796 | 15.95% | 84.05% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 13.40% | 86.60% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 210 | 31.90% | 68.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141058438 | T->A | INTERGENIC | None |