Detailed information of SNP:



SNP ID: sf0141089572(Gbrowse)

Chromosome: chr01

Position: 41089572
Major allele: T

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1419 96.55% 3.45%
All Indica799 99.87% 0.13%
All Japonica497 90.74% 9.26%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 87.46% 12.54%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0141089572 A->T LOC_Os01g70990(LOC_Os01g70990.1) SNPs that introduce stop codons