Detailed information of SNP:
|
SNP ID:
sf0141108733(Gbrowse)
Chromosome: chr01 Position: 41108733 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 51.38% | 48.62% |
| All Indica | 793 | 16.02% | 83.98% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 13.14% | 86.86% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 207 | 32.85% | 67.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141108733 | G->T | INTERGENIC | None |