Detailed information of SNP:
|
SNP ID:
sf0141111687(Gbrowse)
Chromosome: chr01 Position: 41111687 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 57.56% | 42.44% |
| All Indica | 799 | 91.74% | 8.26% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141111687 | A->G | LOC_Os01g71040(LOC_Os01g71040.1) | INTRON |