Detailed information of SNP:
|
SNP ID:
sf0141123730(Gbrowse)
Chromosome: chr01 Position: 41123730 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 68.50% | 31.50% |
| All Indica | 796 | 46.48% | 53.52% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 54.96% | 45.04% |
| Indica II | 213 | 16.90% | 83.10% |
| Indica Intermediate | 210 | 61.43% | 38.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141123730 | T->C | INTERGENIC | None |