Detailed information of SNP:
|
SNP ID:
sf0141182076(Gbrowse)
Chromosome: chr01 Position: 41182076 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 58.26% | 41.74% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141182076 | T->C | INTERGENIC | None |