Detailed information of SNP:
|
SNP ID:
sf0141211585(Gbrowse)
Chromosome: chr01 Position: 41211585 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1212 | 51.65% | 48.35% |
| All Indica | 597 | 85.76% | 14.24% |
| All Japonica | 495 | 2.42% | 97.58% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 232 | 88.36% | 11.64% |
| Indica II | 201 | 90.55% | 9.45% |
| Indica Intermediate | 164 | 76.22% | 23.78% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141211585 | G->C | INTERGENIC | None |