Detailed information of SNP:
|
SNP ID:
sf0141224196(Gbrowse)
Chromosome: chr01 Position: 41224196 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 56.88% | 43.12% |
| All Indica | 798 | 88.85% | 11.15% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141224196 | T->C | LOC_Os01g71240(LOC_Os01g71240.1) | INTRON |