Detailed information of SNP:
|
SNP ID:
sf0141266154(Gbrowse)
Chromosome: chr01 Position: 41266154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 59.07% | 40.93% |
| All Indica | 798 | 41.85% | 58.15% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 374 | 54.81% | 45.19% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 211 | 45.02% | 54.98% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141266154 | T->C | LOC_Os01g71300(LOC_Os01g71300.3) | INTRON |
| sf0141266154 | T->C | LOC_Os01g71300(LOC_Os01g71300.2) | INTRON |
| sf0141266154 | T->C | LOC_Os01g71300(LOC_Os01g71300.1) | INTRON |