Detailed information of SNP:
|
SNP ID:
sf0141319340(Gbrowse)
Chromosome: chr01 Position: 41319340 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 85.89% | 14.11% |
| All Indica | 795 | 82.52% | 17.48% |
| All Japonica | 486 | 88.27% | 11.73% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 85.25% | 14.75% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 326 | 90.49% | 9.51% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141319340 | G->A | INTERGENIC | None |