Detailed information of SNP:
|
SNP ID:
sf0141320480(Gbrowse)
Chromosome: chr01 Position: 41320480 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 52.40% | 47.60% |
| All Indica | 797 | 77.92% | 22.08% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 373 | 80.16% | 19.84% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 66.82% | 33.18% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141320480 | T->C | INTERGENIC | None |