Detailed information of SNP:
|
SNP ID:
sf0141379863(Gbrowse)
Chromosome: chr01 Position: 41379863 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1308 | 75.99% | 24.01% |
| All Indica | 706 | 60.91% | 39.09% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 56 | 92.86% | 7.14% |
| Indica I | 329 | 71.43% | 28.57% |
| Indica II | 190 | 37.37% | 62.63% |
| Indica Intermediate | 187 | 66.31% | 33.69% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141379863 | T->C | INTERGENIC | None |