Detailed information of SNP:
|
SNP ID:
sf0141381029(Gbrowse)
Chromosome: chr01 Position: 41381029 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 84.85% | 15.15% |
| All Indica | 799 | 79.47% | 20.53% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141381029 | A->G | INTERGENIC | None |