Detailed information of SNP:
|
SNP ID:
sf0141386086(Gbrowse)
Chromosome: chr01 Position: 41386086 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 89.88% | 10.12% |
| All Indica | 774 | 91.60% | 8.40% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 355 | 88.45% | 11.55% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 206 | 90.78% | 9.22% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141386086 | A->G | INTERGENIC | None |