Detailed information of SNP:
|
SNP ID:
sf0141496625(Gbrowse)
Chromosome: chr01 Position: 41496625 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 97.94% | 2.06% |
| All Indica | 787 | 96.32% | 3.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 209 | 94.26% | 5.74% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141496625 | T->C | LOC_Os01g71624(LOC_Os01g71624.1) | INTRON |
| sf0141496625 | T->C | LOC_Os01g71624(LOC_Os01g71624.5) | INTRON |
| sf0141496625 | T->C | LOC_Os01g71624(LOC_Os01g71624.2) | INTRON |
| sf0141496625 | T->C | LOC_Os01g71624(LOC_Os01g71624.4) | INTRON |
| sf0141496625 | T->C | LOC_Os01g71624(LOC_Os01g71624.3) | INTRON |