Detailed information of SNP:
|
SNP ID:
sf0141518887(Gbrowse)
Chromosome: chr01 Position: 41518887 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 93.04% | 6.96% |
| All Indica | 785 | 87.77% | 12.23% |
| All Japonica | 486 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 89.49% | 10.51% |
| Indica II | 208 | 92.79% | 7.21% |
| Indica Intermediate | 206 | 79.61% | 20.39% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141518887 | C->A | INTERGENIC | None |