Detailed information of SNP:
|
SNP ID:
sf0141555643(Gbrowse)
Chromosome: chr01 Position: 41555643 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 96.41% | 3.59% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141555643 | T->A | LOC_Os01g71720(LOC_Os01g71720.1) | Non-Synonymous SNP |