Detailed information of SNP:
|
SNP ID:
sf0141557077(Gbrowse)
Chromosome: chr01 Position: 41557077 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 97.52% | 2.48% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 63 | 65.08% | 34.92% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141557077 | G->A | LOC_Os01g71720(LOC_Os01g71720.1) | INTRON |