Detailed information of SNP:
|
SNP ID:
sf0141567368(Gbrowse)
Chromosome: chr01 Position: 41567368 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 87.92% | 12.08% |
| All Indica | 797 | 88.33% | 11.67% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 82.67% | 17.33% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0141567368 | T->A | INTERGENIC | None |